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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs3771570 1 rs62193256 chr2:242362168 SEPT2 chr2:242254723-242293439:+ -0.31 -4.57 6.31E-6 Prostate cancer
THCA cis rs34602589 1 rs62206437 chr20:43759316 STK4 chr20:43595120-43708591:+ -0.17 -3.9 0.00011 Parental longevity (mother's age at death)
THCA cis rs6089829 1 rs62207535 chr20:61669187 ADRM1 chr20:60878027-60883916:+ 0.09 3.55 0.000421 Prostate cancer (gene x gene interaction)
THCA cis rs237450 1 rs62207635 chr20:47951583 C20orf199 chr20:47894715-47905793:+ 0.29 4.06 5.75E-5 QT interval
THCA cis rs428445 1 rs62210663 chr20:55067481 C20orf43 chr20:55043647-55093942:+ 0.24 6.55 1.45E-10 Refractive astigmatism
THCA cis rs6088813 1 rs62211529 chr20:33959315 CPNE1 chr20:34213968-34262539:- 0.3 5.88 7.84E-9 Height
THCA cis rs6088813 1 rs62211529 chr20:33959315 GDF5 chr20:33897002-34042568:- -0.17 -3.74 0.000207 Height
THCA cis rs6088813 1 rs62211529 chr20:33959315 UQCC chr20:33890383-33999833:- 0.32 10.18 3.81E-22 Height
THCA cis rs9878978 1 rs62233805 chr3:2474385 CNTN4 chr3:2140550-3099644:+ 0.37 8.62 1.01E-16 Blood pressure (smoking interaction)
THCA cis rs9878978 1 rs62233806 chr3:2475478 CNTN4 chr3:2140550-3099644:+ 0.36 8.43 4.08E-16 Blood pressure (smoking interaction)
THCA cis rs4820294 1 rs62236665 chr22:38059847 LGALS2 chr22:37966254-37976024:- 0.14 3.71 0.000232 Fat distribution (HIV)
THCA cis rs4820294 1 rs62236665 chr22:38059847 PDXP chr22:38054737-38062939:+ -0.18 -3.34 0.000892 Fat distribution (HIV)
THCA cis rs4820294 1 rs62236665 chr22:38059847 SH3BP1 chr22:38030661-38062939:+ 0.12 3.74 0.00021 Fat distribution (HIV)
THCA cis rs4820294 1 rs62236667 chr22:38061520 LGALS2 chr22:37966254-37976024:- 0.13 3.52 0.000477 Fat distribution (HIV)
THCA cis rs4820294 1 rs62236667 chr22:38061520 PDXP chr22:38054737-38062939:+ -0.18 -3.38 0.000775 Fat distribution (HIV)